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CF Discovery Core and CF Biospecimen Repository (CF-BR)

The CF Discovery Core and CF Biospecimen Repository (CF-BR) is dedicated to advancing basic, translational, and clinical research in cystic fibrosis (CF). Our goal is to deepen the understanding of CF disease mechanisms and enhance diagnosis and treatment for people with CF (PwCF).

While highly effective modulator therapies (HEMTs) have significantly improved CF lung disease management, non-pulmonary co-morbidities remain a major challenge, impacting quality of life and long-term survival. These include CF-related diabetes (CFRD), CF-related bone disease (CFBD), CF-related liver disease (CFLD), and CF-related mental health and gastrointestinal issues. 

Given the complexity of CF, interdisciplinary, phenotype-based precision medicine is crucial for improving long-term management of pulmonary and non-pulmonary disease. To support this, the CF Discovery Core provides:

  1. Access to the CF-BR – A comprehensive collection of biological samples from PwCF (including healthy and lung disease controls), gathered longitudinally across various health states.
  2. Access to clinical data through the Georgia Cystic Fibrosis Data Warehouse – Linking biospecimens with extensive, de-identified patient data to support integrated research.
  3. Expert scientific consultation – A Research Oversight Committee (ROC) of biostatisticians, clinicians, and researchers ensures rigor and feasibility in study design.

The CF Discovery Core is made possible by the generosity of patient volunteers from the Children’s+Emory CF Care Center. With ~700 PwCF in our adult and pediatric programs, nearly 70% participate, contributing invaluable samples and clinical data. This unique resource bridges basic research and real-world clinical outcomes, driving meaningful advancements in CF care.

The CF Discovery Core is funded by the Marcus Foundation Professorship in Pulmonology for Dr. Stecenko, Children’s Healthcare of Atlanta, NIH P30 DK125013 and NIH U24 HL17672. 

The CF-BR Leadership Team: Dr. Lokesh Guglani, Dr. Kymry Jones, Dr. Arlene Stecenko, Chris Driggers
The CF-BR Leadership Team: Dr. Lokesh Guglani, Dr. Kymry Jones, Dr. Arlene Stecenko, Chris Driggers

 

The CF Discovery Core and CF-BR provide researchers with high-quality, patient-derived biospecimens (CF, healthy, and lung disease controls), integrated clinical data, and expert consultation to accelerate CF research. Our diverse sample offerings—including blood, sputum, cells, bacterial isolates, and other biologics—combined with specialized services such as standardized sputum processing, ensure reliable, research-ready materials for a wide range of studies. By connecting longitudinal biospecimens with clinical data, the CF Discovery Core drives discoveries in CF pathophysiology, treatment response, and disease progression, ultimately improving patient care.

Our Services:

  • Sample Collection & Processing – Access unprocessed or processed sputum, blood, urine, stool, cells, bacterial isolates and other biologics from Emory’s adult and pediatric CF clinics, including healthy and lung disease controls.
  • Biobanking & Storage – Secure, long-term storage of biospecimens for future research.
  • Clinical Data Integration – A robust database linking each sample to comprehensive, de-identified clinical data.
  • Research Support & Consultation – Work with our experts to design studies and optimize sample utilization.

For project planning or sample access, contact Dr. Arlene Stecenko to discuss how the CF Discovery Core can support your research.

Harmonized Sputum Processing

To ensure consistency and maximize research potential, the CF-BR has partnered with the Chandler, Kopp, and Tirouvanziam labs to develop a standardized sputum processing method. Dedicated technicians homogenize and process sputum samples immediately, providing high-quality materials for diverse research applications including:

Sputum Supernatant

  • Cell-free supernatant processed via sequential centrifugation.
  • Total protein concentration measured for assay standardization.
  • Ideal for airway conditioning studies and research on small molecules, macromolecules, and extracellular vesicles.
  • Availability: 2 x 500 µl per specimen banked in the CF-BR.

Bacterial RNA

  • Bacteria isolated and RNA preserved with RNALater.
  • Banked at -80°C for researcher access.

Supporting Data (Linked to biobanked samples and clinical data)

  • FACS analysis characterizing airway leukocytes (neutrophils, monocytes, macrophages, eosinophils, lymphocytes).
  • Sputum supernatant protein concentration for assay standardization and potential disease outcome correlations.
  • Additional project-specific data, including:
    • Fresh leukocyte assays
    • Sputum metabolite and protein profiles
    • CFTR modulator level assessments

This harmonized processing approach enhances data sharing, fosters collaboration, and supports longitudinal studies on CF lung disease, especially during this pivotal era of highly effective modulator therapies and emerging gene therapy trials.

The CF Discovery Core and CF-BR located at Emory Children's Center offer fresh and frozen patient-derived samples, available for pickup or delivery, to support internal and external researchers studying CF. To initiate new projects, please contact Dr. Arlene Stecenko. 

Patient-derived sample requests require approval by the Research Oversight Committee (ROC), consisting of clinicians, researchers, biostatisticians, and clinical research coordinators to ensure feasibility and scientific rigor. The committee will be selected depending according to your project needs, and may include these standing committee members: 

 

Rachel Linnemann MD   Jessica Alvarez, PhD, RDKathryn Oliver, PhD
Nael McCarty, PhD Joshua Chandler, PhD Joshua Chandler, PhD 
Steve Diggle, PhDLokesh Guglani, MDJoanna Goldberg, PhD
Benjamin Kopp, MDRandy Hunt, MD Ryan Harris, PhD
Rabin Tirouvanziam, PhDBalazs Rada, PhD  Shasha Bai, PhD
Scott Gillespie, MS, MSPH   Vin Tangpricha, MD         Marvin Whiteley, PhD   
Tom Ziegler, MDSam Brown, PhDEric Hunter
Chris DriggersDesiree CokerKaty Clemmer

 

For submission of a ROC request form, please contact Dr. Kymry Jones.

The prioritization for distribution of samples from the CF-BR is as follows:

  • First priority: Emory+Children’s core CF research team.
  • Second priority: Investigators using these samples for NIH and CF Foundation funded projects.
  • Third priority: Investigators using these samples to generate preliminary data for NIH and CFF grant proposals.
  • Fourth priority: Investigators outside of Atlanta, except in cases of established collaborations.

Each price reflects the minimum personnel effort and supply costs required. The listed base rates apply to internal users subsidized by Children’s Healthcare of Atlanta, while non-academic users are subject to rates up to 56% higher than Emory’s standard pricing. 

Sample types:

  • Fresh Biological Sample (unprocessed blood or expectorated sputum): $47/sample
  • Sputum-processed: $99/500µl
  • Sputum-induced: $74/500µl
  • Exhaled Breath Condensate: $100
  • Bronchoalveolar fluid: $328
  • Blood processed: $82
  • Bacterial Isolates: $38
  • Service Consultation and Data Retrieval: $46/hour
  • Non-invasive Sample Collection: $26
  • Skin Biopsy: $26
  • Nasal Brushing: $30
  • Continuous Glucose Monitoring (CGM): $106

 

For more information, please contact Dr. Kymry Jones or Chris Driggers. For questions about using the core for your project, please contact Dr. Arlene Stecenko. Each price reflects the minimum personnel effort and supply costs required. The listed base rates apply to internal users subsidized by Children’s Healthcare of Atlanta, while non-academic users are subject to rates up to 56% higher than Emory’s standard pricing. 

The CF Discovery Core is generously supported by Children's Healthcare of Atlanta and Emory University. When presenting or publishing work completed using the core, please include "Children's Healthcare of Atlanta and Emory University Pediatric CF Discovery Core" in the acknowledgments.

To determine if you should use "Children's Healthcare of Atlanta" in your author affiliations, please see guidelines here.

Dr. Balazs Rada: (The University of Georgia)
"The Rada laboratory at the University of Georgia studies neutrophil-mediated inflammation in cystic fibrosis airways using animal models and human biospecimen. The team also investigates autoimmunity in cystic fibrosis. The laboratory is involved in tight collaborations with several investigators at the Emory University CF Center related to these projects. The CF Discovery Core has played essential roles in all of our CF-related projects by providing blood and sputum samples, bacterial isolates and live immune cells obtained from cystic fibrosis patients."


Dr. Joshua Chandler: (Emory University)
“Access to the CF Discovery core is essential to my laboratory’s experiments. As a PhD scientist, reliable access to deidentified fresh and frozen clinical samples is a wonderful benefit that is difficult to overstate. Additionally, we have used the core’s well-organized clinical data – such as which patients are taking highly effective CFTR modulators – to make novel discoveries within our results and carve out new research directions.”

Meet the Team


Arlene Stecenko, MD

Co-Director of the CF Center of Excellence, Marcus Professor of Pulmonology, and Director, Cystic Fibrosis Biospecimen Repository & The Georgia Cystic Fibrosis Data Warehouse

astecen@emory.edu

Lokesh Guglani, MD, FAAP

Associate Professor of Pediatrics, Emory University School of Medicine and Co-Director, CF-BR

lokesh.guglani@emory.edu

Chris Driggers

Technical Director, CF-BR

william.driggers@emory.edu

Kymry Jones, PhD

Associate Director, CF@LANTA Research

ktjones8@emory.edu

Upcoming Events

Mon Mar 171:00PM-2:00PM
CCIV Seminar- Christopher LaRock, PhD
Mon Mar 241:00PM-2:00PM
CCIV Seminar-Lisa Marie Cranmer
Mon Mar 311:00PM-2:00PM
CCIV Seminar-Christopher John Neufeldt
Fri Apr 48:30AM-5:30PM
Emory Physician Scientist Symposium
Mon Apr 71:00PM-2:00PM
CCIV Seminar- Rafael Medina
Mon Apr 141:00PM-2:00PM
CCIV Seminar- Dariana Torres Riveira
Mon Apr 211:00PM-2:00PM
CCIV Seminar- Sara Sagadiev
Mon Apr 281:00PM-2:00PM
CCIV Seminar- Chris Scharer
Mon May 51:00PM-2:00PM
CCIV Seminar- Erin Scherer
Mon May 121:00PM-2:00PM
CCIV Seminar- Devyani Joshi

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