Software
The core recommends the following software to aid you in your flow analysis; we also provide two offline workstations free of charge with most of this software installed:
- FCS Express 6
- SpectroFlo
- Cytxpert
- IDEAS
- FACS DiVa 8.1
- Kaluza
- R
- Spade
- Flowjo (See Below)
Flowjo
Emory University provides a Site License for FlowJo via the FlowJo Portal , you can register by clicking their logo below.
For more information on FlowJo licensing please contact Kiran Gill or John Altman. Yerkes Flow Core manages this, please direct questions to them.
FlowJo Essentials
- Download FlowJo here: https://www.flowjo.com/solutions/flowjo/downloads
- Handy Tutorials can be found here: https://www.flowjo.com/solutions/flowjo/downloads/tutorials
- FlowJo exchange is a great place for Plugins and resources to help you get the most from FlowJo.
A few of the Plugins Available for FlowJo (See FlowJo Exchange above for more Plugins):
- FlowSOM - Cluster using Self Organized Maps
- UMAP - A dimesonality reduction similar to t-SNE
- t-SNE - Visualizes reduced data dimensions while still maintaining the structure of the data
- FlowAI - Find anomalies in Flow Cytometry Data
- Hyperfinder - Automatically find the shortest gating strategy to A Population of Interest
Information on the Normalization of Data
Meet the Team
David Archer, PhD
Scientific Director, Pediatric+Winship Flow Cytometry Core and Animal Physiology Core
Aaron Rae
Core Technical Director, Pediatric+Winship Flow Cytometry Core
Igor Albizua-Santin
Flow Cytometry Technologist Supervisor
Ashley Jones, MS
Flow Cytometry Technologist, Sr